 Publications:
- Bhattacharya S ., Srisuma S., DeMeo D.L, Shapiro S.D., Bueno R., Silverman E.K., Reilly J.J. and Mariani T. J. In Press Molecular Biomarkers for Quantitative and Discrete COPD Phenotypes, AJRCMB
- Kho , A.T, Bhattacharya S., Mecham B.H, Kohane I.S and Mariani T.J., 2009 Expression Profiles of the Mouse Lung Identify a Molecular Signature of Time-to-Birth. Am J Respir Cell Mol Biol. 40: 47–57.
- Craig F E, Johnson L R, Harvey S A K, Nalesnik M A, Luo J H, Bhattacharya S and Swerdlow S H., 2007, Gene Expression Profiling of Epstein-Barr Virus-Positive and –Negative Monomorphic B-Cell Posttransplant Lymphoproliferative Disorders. Diagn Mol Pathol. 16(3):158-68
- MacDonald TJ, Pollack IF, Okada H, Bhattacharya S, Lyons-Weiler J. 2007 Progression-associated genes in astrocytoma identified by microarray gene expression data re-analysis. In Korenberg M (ed). Microarray Data Analysis: Methods and Applications. Methods in Molecular Biology, Humana Press Inc.
- Simon D.M., Arikan M.C., Srisuma S., Bhattacharya S., Tsai L.W., Ingenito E.P., Gonzalez F., Shapiro S.D., and Mariani, T.J., 2006 Epithelial Cell PPAR g Contributes to Normal Lung Maturation, FASEB J. 20(9):1507-9
- Bhattacharya, S and Mariani, TJ., 2005 Inter-Generation Transformation of Expression Intensities from Affymetrix arrays using Sequence Matching and Regression Modeling. Nucleic Acids Res. 2005 Oct 13;33(18):e157
- Bhattacharya, S ., Long DD. and Lyons-Weiler, J. 2003 Overcoming Confounded Controls in the Analysis of Gene Expression Data from Microarray Experiments. Applied Bioinformatics 2(4): 197-208
- Lyons-Weiler, J, Patel, S., and Bhattacharya, S.2003, A Classification-Based Machine learning Approach for the Analysis of Genome-Wide Expression Data. Genome Research 13:503–512
- Simon D.M., Arikan M.C., Srisuma S., Bhattacharya S., Tsai L.W., Ingenito E.P., Gonzalez F., Shapiro S.D., and Mariani, T.J., In Press Epithelial Cell PPAR g Contributes to Normal Lung Maturation, FASEB J.
- Kho AT, Bhattacharya S, Tantisira KG, Carey VJ, Gaedigk R, Leeder JS, Kohane IS, Weiss ST, Mariani TJ. Analysis Identifies Molecular Phases of Human Lung Development. In Review.
Papers Presented:
- “Molecular Markers for Quantitative and Discrete COPD Phenotypes” Proceedings of 13 th Annual Congress of Asia Pacific Society of Respirology, November 19-22, 2008, Bangkok, Thailand
- “Gene Expression Profiles of the Developing Human Lung Predict Fetal Age in Mice and Men” Proceedings of 13 th Annual Congress of Asia Pacific Society of Respirology, November 19-22, 2008, Bangkok, Thailand
- “ Cross-species Multi-scalar Resolution of the Developing Lung Transcriptome” 5 th Rocky Mountain Bioinformatics Conference 2007 (ROCKY 07), Aspen, CO, USA, November 29 th, 2007
- “Molecular Markers for Quantitative and Discrete COPD Phenotypes” Experimental Biology 2007 Annual Meeting, Washington, DC, USA, April 28 th, 2007
- “Microarrays: Challenge and Opportunities” 7 th Linus Pauling Biotech-Pharma Symposium, MIT, USA, February 26, 2006
- “Microarray Data Analysis: Current State and Future Directions” Tufts University Medical Center, Tufts University, USA, February 16, 2005
- “Applications of Microarray Technology” Fitchburg State College, Fitchburg, USA, December 10, 2004
- “GEDA: An Online Gene Expression Data Analysis Portal” Affymetrix Technology Seminar, UPMC Cancer Center, Pittsburgh, USA, February 25, 2004
- “Microarray Technology and Data Analysis” A Series of Lectures in Introduction to Bioinformatics (BIOINF 2081) at Center for Biomedical Informatics, University of Pittsburgh, USA, Fall 2003
- “Computational Discovery of Biomarkers using Simple Machine Learning Approach” at The Children’s Hospital, Pittsburgh, USA, October 10 th 2003
- “An Empirical Comparison of Algorithms used for detecting Differentially Expressed Genes: Cancer Datasets” at 2 nd Annual UMASS Bioinformatics Conference, University of Massachusetts Lowell, USA, May 2 nd 2002
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